Difference between revisions of "Amphora2"
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{{#if: {{#var: testing}}|==Performance== | {{#if: {{#var: testing}}|==Performance== | ||
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If you publish research that uses {{#var:app}} you have to cite it as follows: | If you publish research that uses {{#var:app}} you have to cite it as follows: | ||
| − | + | Wu M, Scott AJ. Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2. Bioinformatics 2012; 28(7):1033-1034 | |
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Revision as of 16:42, 9 October 2017
Description
An Automated Phylogenomic Inference Pipeline for Bacterial and Archaeal Sequences.
AMPHORA2 is free software: you may redistribute it and/or modify its under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or any later version.
Required Modules
Serial
- amphora2
System Variables
- HPC_{{#uppercase:amphora2}}_DIR - installation directory
- HPC_{{#uppercase:amphora2}}_BIN - executable directory
- HPC_{{#uppercase:amphora2}}_DOC - documentation directory
- HPC_{{#uppercase:amphora2}}_EXE - test data directory
- HPC_{{#uppercase:amphora2}}_TAX- taxonomy data directory
- HPC_{{#uppercase:amphora2}}_TREE - tree data directory
Citation
If you publish research that uses amphora2 you have to cite it as follows:
Wu M, Scott AJ. Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2. Bioinformatics 2012; 28(7):1033-1034