Difference between revisions of "DeepPicker"
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executables directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 21:20, 6 December 2019
Description
DeepPicker employs a novel cross-molecule training strategy to capture common features of particles from previously-analyzed micrographs, and thus does not require any human intervention during particle picking.
Required Modules
System Variables
- HPC_DEEPPICKER_DIR - installation directory
- HPC_DEEPPICKER_BIN - executables directory
Additional Information
This software is installed in a container.
Basic usage:
launch_deeppicker autoPick.py --help
To see the list of available executables:
launch_deeppicker ls $HPC_DEEPPICKER_BIN