Difference between revisions of "Canu"
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Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DOC - documentation directory |
<!--Configuration--> | <!--Configuration--> | ||
Revision as of 21:18, 6 December 2019
Description
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or Oxford Nanopore MinION).
Required Modules
Serial
- canu
- gcc/5.2.0
System Variables
- HPC_CANU_DIR - installation directory
- HPC_CANU_BIN - executable directory
- HPC_CANU_DOC - documentation directory
Additional Information
When running Canu you should specify Memory and CPU usage in your command. e.g.
#SBATCH --cpus-per-task=8 #SBATCH --mem=10g
-maxThreads=8 -maxMemory=10g
Citation
If you publish research that uses canu you have to cite it as follows: