Difference between revisions of "IMOD"
Jump to navigation
Jump to search
| Line 36: | Line 36: | ||
==System Variables== | ==System Variables== | ||
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | * HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | ||
| + | * HPC_IMOD_BIN - executables directory | ||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 18:13, 29 September 2016
Description
IMOD is a set of image processing, modeling and display programs used for tomographic reconstruction and for 3D reconstruction of EM serial sections and optical sections. The package contains tools for assembling and aligning data within multiple types and sizes of image stacks, viewing 3-D data from any orientation, and modeling and display of the image files. IMOD was developed primarily by David Mastronarde, Rick Gaudette, Sue Held, Jim Kremer, Quanren Xiong, and John Heumann at the University of Colorado.
Required Modules
Serial
- imod
System Variables
- HPC_{{#uppercase:imod}}_DIR - installation directory
- HPC_IMOD_BIN - executables directory
Additional Information
IMOD is installed in a container. Use the 'launch_imod' command to access IMOD executables:
$ launch_imod 3dmod
or
$ launch_imod etomo
To see the list of all available executables in IMOD use the following command:
$ launch_imod ls $HPC_IMOD_BIN