RnaQUAST: Difference between revisions
Jump to navigation
Jump to search
Created page with "Category:SoftwareCategory:BiologyCategory:NGSCategory:Sequencing {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|rnaquast}} |{{#vardefine:url|http://bioinf...." |
Moskalenko (talk | contribs) m Text replacement - "#uppercase" to "uc" |
||
| Line 36: | Line 36: | ||
--> | --> | ||
==System Variables== | ==System Variables== | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 21:24, 6 December 2019
Description
rnaQUAST is a tool for evaluating quality of transcriptome assemblies using reference genome and gene database.
Required Modules
Serial
- rnaquast
System Variables
- HPC_RNAQUAST_DIR - installation directory
Citation
If you publish research that uses rnaquast you have to cite it as follows:
http://spades.bioinf.spbau.ru/rnaquast/release1.2.0/manual.html#sec5