Difference between revisions of "SortMeRNA"
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Revision as of 21:24, 6 December 2019
Description
SortMeRNA is a biological sequence analysis tool for filtering, mapping and OTU-picking NGS reads. The core algorithm is based on approximate seeds and allows for fast and sensitive analyses of nucleotide sequences. The main application of SortMeRNA is filtering rRNA from metatranscriptomic data.
Required Modules
Serial
- sortmerna
System Variables
- HPC_SORTMERNA_DIR - installation directory
Citation
If you publish research that uses sortmerna you have to cite it as follows: