Difference between revisions of "Roary"
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Revision as of 21:24, 6 December 2019
Description
Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format (produced by Prokka (Seemann, 2014)) and calculates the pan genome. Roary is not intended for meta-genomics or for comparing extremely diverse sets of genomes.
Required Modules
Serial
- roary
System Variables
- HPC_ROARY_DIR - installation directory
Citation
If you publish research that uses roary you have to cite it as follows: