Difference between revisions of "Spidey"
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
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Revision as of 21:24, 6 December 2019
Description
Spidey is an mRNA-to-genomic alignment program. Spidey has two main goals: find good alignments regardless of intron size; and avoid getting confused by nearby pseudogenes and paralogs. Spidey uses NCBI BLAST and Dot View (another local alignment tool) to find its alignments; since these are both local alignment tools, Spidey does not intrinsically favor shorter or longer introns and has no maximum intron size.
Required Modules
Serial
- spidey
System Variables
- HPC_SPIDEY_DIR - installation directory