Difference between revisions of "SNeP"
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(Created page with "Category:SoftwareCategory:BiolgyeCategory:Phylogenics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|snep}} |{{#vardefine:url|http://sourceforge.net/projects/s...") |
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If you publish research that uses {{#var:app}} you have to cite it as follows: | If you publish research that uses {{#var:app}} you have to cite it as follows: | ||
| − | Barbato M, Orozco-terWengel P, Tapio M and Bruford MW (2015). | + | [http://journal.frontiersin.org/article/10.3389/fgene.2015.00109/abstract Barbato M, Orozco-terWengel P, Tapio M and Bruford MW (2015). |
SNeP: a tool to estimate trends in recent effective population size trajectories using genome-wide SNP data. | SNeP: a tool to estimate trends in recent effective population size trajectories using genome-wide SNP data. | ||
| − | Front. Genet. 6:109. doi: 10.3389/fgene.2015.00109 | + | Front. Genet. 6:109. doi: 10.3389/fgene.2015.00109] |
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Revision as of 13:01, 2 September 2015
Description
SNeP is a piece of software written in C++ that performs historical Effective Population Size (Ne) trajectories estimation through Linkage Disequilibrium (LD). Calculations are based on genome-wide genotype data
Required Modules
Serial
- snep
System Variables
- HPC_{{#uppercase:snep}}_DIR - installation directory
Citation
If you publish research that uses snep you have to cite it as follows:
[http://journal.frontiersin.org/article/10.3389/fgene.2015.00109/abstract Barbato M, Orozco-terWengel P, Tapio M and Bruford MW (2015). SNeP: a tool to estimate trends in recent effective population size trajectories using genome-wide SNP data. Front. Genet. 6:109. doi: 10.3389/fgene.2015.00109]