Difference between revisions of "GCTA"
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[http://www.ncbi.nlm.nih.gov/pubmed/21167468 Yang J, Lee SH, Goddard ME and Visscher PM. GCTA: a tool for Genome-wide Complex Trait Analysis. Am J Hum Genet. 2011 Jan 88(1): 76-82. PubMed ID: 21167468] | [http://www.ncbi.nlm.nih.gov/pubmed/21167468 Yang J, Lee SH, Goddard ME and Visscher PM. GCTA: a tool for Genome-wide Complex Trait Analysis. Am J Hum Genet. 2011 Jan 88(1): 76-82. PubMed ID: 21167468] | ||
| + | Full list of citations covering the methods used by the software is available from the [http://cnsgenomics.com/software/gcta/index.html project website]. | ||
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Revision as of 20:10, 22 July 2015
Description
GCTA (Genome-wide Complex Trait Analysis) was originally designed to estimate the proportion of phenotypic variance explained by genome- or chromosome-wide SNPs for complex traits (the GREML method), and has subsequently extended for many other analyses to better understand the genetic architecture of complex traits.
Required Modules
Serial
- gcta
System Variables
- HPC_{{#uppercase:gcta}}_DIR - installation directory
Citation
If you publish research that uses gcta you have to cite it as follows:
Full list of citations covering the methods used by the software is available from the project website.