VAST-TOOLS: Difference between revisions
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Moskalenko (talk | contribs) Created page with "Category:SoftwareCategory:BioinformaticsCategory:NGS {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|vast-tools}} |{{#vardefine:url|https://github.com/vastgroup..." |
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<!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | <!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | ||
|{{#vardefine:conf|}} <!--CONFIGURATION--> | |{{#vardefine:conf|}} <!--CONFIGURATION--> | ||
|{{#vardefine:exe|}} <!--ADDITIONAL INFO--> | |{{#vardefine:exe|1}} <!--ADDITIONAL INFO--> | ||
|{{#vardefine:pbs|}} <!--PBS SCRIPTS--> | |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> | ||
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{{#if: {{#var: exe}}|==Additional Information== | {{#if: {{#var: exe}}|==Additional Information== | ||
Two VASTDB databases provided by the project have been downloaded and installed into the default location | |||
* Hsa (vastdb.hsa.7.3.14, human) | |||
* Mmu (vastdb.mmu.7.3.14, mouse) | |||
|}} | |}} | ||
Revision as of 20:15, 3 June 2015
Description
Vertebrate Alternative Splicing and Transcription Tools (VAST-TOOLS) is a toolset for profiling alternative splicing events in RNA-Seq data.
Required Modules
Serial
- vast-tools
System Variables
- HPC_{{#uppercase:vast-tools}}_DIR - installation directory
Additional Information
Two VASTDB databases provided by the project have been downloaded and installed into the default location
- Hsa (vastdb.hsa.7.3.14, human)
- Mmu (vastdb.mmu.7.3.14, mouse)