Difference between revisions of "RepeatExplorer"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) (Created page with "Category:SoftwareCategory:BioinformaticsCategory:Genomics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|repeatexplorer}} |{{#vardefine:url|http://www.repeatex...") |
|||
| Line 81: | Line 81: | ||
<!--Turn the Table of Contents and Edit paragraph links ON/OFF--> | <!--Turn the Table of Contents and Edit paragraph links ON/OFF--> | ||
__NOTOC____NOEDITSECTION__ | __NOTOC____NOEDITSECTION__ | ||
| + | =Validation= | ||
| + | * Validate 4/5/2018 | ||
Revision as of 20:41, 5 April 2018
Description
RepeatExplorer is a computational pipeline for discovery and characterization of repetitive sequences in eukaryotic genomes. The pipeline uses high-throughput genome sequencing data as an input and performs graph-based clustering analysis of sequence read similarities to identify repetitive elements within analyzed samples. The analysis principles were described in Novak et al. (2010).
Required Modules
Serial
- repeatexplorer
System Variables
- HPC_{{#uppercase:repeatexplorer}}_DIR - installation directory
Validation
- Validate 4/5/2018