Difference between revisions of "Scythe"
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Moskalenko (talk | contribs) (Created page with "Category:SoftwareCategory:BioinformaticsCategory:NGS {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|scythe}} |{{#vardefine:url|https://github.com/vsbuffalo/scy...") |
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Revision as of 19:35, 5 April 2018
Description
Scythe uses a Naive Bayesian approach to classify contaminant substrings in sequence reads. It considers quality information, which can make it robust in picking out 3'-end adapters, which often include poor quality bases.
Required Modules
Serial
- scythe
System Variables
- HPC_{{#uppercase:scythe}}_DIR - installation directory
Validation
- Validated 4/5/2018