Difference between revisions of "BRANCH"
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Revision as of 18:00, 5 April 2018
Description
branch website
BRANCH is a software that extends de novo transfrags and identifies novel transfrags with DNA contigs or genes of close related species. BRANCH discovers novel exons first and then extends/joins fragmented de novo transfrags, so that the resulted transfrags are more complete.
Required Modules
Serial
- branch
System Variables
- HPC_{{#uppercase:branch}}_DIR
Citation
If you publish research that uses branch you have to cite it as follows: If you use BRANCH, please cite the following paper:
Bao E, Jiang T, Girke T (2013). BRANCH: boosting RNA-Seq assemblies with partial or related genomic sequences. Bioinformatics: epub.
Validation
- Validated 4/5/2018