Difference between revisions of "RSEG"
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[[Modules|modules documentation]] | [[Modules|modules documentation]] | ||
===Serial=== | ===Serial=== | ||
| − | * | + | *rseg |
==System Variables== | ==System Variables== | ||
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | * HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | ||
Revision as of 15:59, 12 March 2013
Description
The RSEG software package is aimed to analyze ChIP-Seq data, especially for identifying genomic regions and their boundaries marked by diffusive histone modification markers, such as H3K36me3 and H3K27me3. It can work with or without control sample. It can be used to find regions with differential histone modifications patterns, either comparsion between two cell types or between two kinds of histone modifications.
Required Modules
Serial
- rseg
System Variables
- HPC_{{#uppercase:RSEG}}_DIR - installation directory
- HPC_{{#uppercase:RSEG}}_BIN - executable directory