Difference between revisions of "NetCDF"
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| − | [[Category:Software]] | + | [[Category:Software]][[Category:Data Science]] |
{|<!--Main settings - REQUIRED--> | {|<!--Main settings - REQUIRED--> | ||
|{{#vardefine:app|netcdf}} | |{{#vardefine:app|netcdf}} | ||
|{{#vardefine:url|http://www.unidata.ucar.edu/software/netcdf/}} | |{{#vardefine:url|http://www.unidata.ucar.edu/software/netcdf/}} | ||
| − | |{{#vardefine:exe|}} <!--Present manual instructions for running the software --> | + | |{{#vardefine:exe|1}} <!--Present manual instructions for running the software --> |
| − | |{{#vardefine:conf| | + | |{{#vardefine:conf|}} <!--Enable config wiki page link - {{#vardefine:conf|1}} = ON/conf|}} = OFF--> |
|{{#vardefine:pbs|}} <!--Enable PBS script wiki page link--> | |{{#vardefine:pbs|}} <!--Enable PBS script wiki page link--> | ||
|{{#vardefine:policy|}} <!--Enable policy section --> | |{{#vardefine:policy|}} <!--Enable policy section --> | ||
|{{#vardefine:testing|}} <!--Enable performance testing/profiling section --> | |{{#vardefine:testing|}} <!--Enable performance testing/profiling section --> | ||
|{{#vardefine:faq|}} <!--Enable FAQ section --> | |{{#vardefine:faq|}} <!--Enable FAQ section --> | ||
| − | |{{#vardefine:citation|}} <!--Enable Reference/Citation section --> | + | |{{#vardefine:citation|1}} <!--Enable Reference/Citation section --> |
|} | |} | ||
<!-- ######## Template Body ######## --> | <!-- ######## Template Body ######## --> | ||
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NetCDF is a set of software libraries and self-describing, machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. | NetCDF is a set of software libraries and self-describing, machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. | ||
| + | |||
| + | ;Note: | ||
| + | :Starting with version 4.4.3 the upstream project split C and Fortran NetCDF libraries, which will take different developmental paths. We are following the upstream, so we have netcdf-c and netcdf-f environment modules for 4.4.3 and later NetCDF libraries. Please load the appropriate module. Note that the Fortran module man not have all supporting binaries that netcdf-c module has. | ||
<!--Modules--> | <!--Modules--> | ||
| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
| − | |||
| − | |||
==System Variables== | ==System Variables== | ||
| − | HPC_NETCDF_DIR | + | * HPC_NETCDF_DIR - installation directory |
| − | HPC_NETCDF_BIN | + | * HPC_NETCDF_BIN - executable binary directory |
| − | HPC_NETCDF_LIB | + | * HPC_NETCDF_LIB - library directory |
| − | HPC_NETCDF_INC | + | * HPC_NETCDF_INC - include directory |
| + | |||
| + | {{#if: {{#var: exe}}|==Additional Information== | ||
To use the NETCDF library, compile the source code with the option: | To use the NETCDF library, compile the source code with the option: | ||
| − | + | *-I$HPC_NETCDF_INC | |
and add the following options to the link step: | and add the following options to the link step: | ||
| − | + | *-L$HPC_NETCDF_LIB -lnetcdf|}} | |
| − | |||
| − | |||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
| − | See the [[{{PAGENAME}}_4. | + | See the [[{{PAGENAME}}_4.2]] page for {{#var: app}} configuration details.|}} |
{{#if: {{#var: pbs}}|==PBS Script Examples== | {{#if: {{#var: pbs}}|==PBS Script Examples== | ||
See the [[{{PAGENAME}}_PBS]] page for {{#var: app}} PBS script examples.|}} | See the [[{{PAGENAME}}_PBS]] page for {{#var: app}} PBS script examples.|}} | ||
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*'''Q:''' **'''A:'''|}} | *'''Q:''' **'''A:'''|}} | ||
{{#if: {{#var: citation}}|==Citation== | {{#if: {{#var: citation}}|==Citation== | ||
| − | If you publish research that uses {{ | + | If you publish research that uses {{#var:app}}, you may cite it as follows: |
| − | + | ||
| + | Rew, R. K. and G. P. Davis, "NetCDF: An Interface for Scientific Data Access," IEEE Computer Graphics and Applications, Vol. 10, No. 4, pp. 76-82, July 1990. | ||
| + | |||
| + | Brown, S. A, M. Folk, G. Goucher, and R. Rew, "Software for Portable Scientific Data Management," Computers in Physics, American Institute of Physics, Vol. 7, No. 3, May/June 1993, pp. 304-308. | ||
| + | |||
|}} | |}} | ||
Latest revision as of 14:56, 12 March 2024
Description
NetCDF is a set of software libraries and self-describing, machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
- Note
- Starting with version 4.4.3 the upstream project split C and Fortran NetCDF libraries, which will take different developmental paths. We are following the upstream, so we have netcdf-c and netcdf-f environment modules for 4.4.3 and later NetCDF libraries. Please load the appropriate module. Note that the Fortran module man not have all supporting binaries that netcdf-c module has.
Environment Modules
Run module spider netcdf to find out what environment modules are available for this application.
System Variables
- HPC_NETCDF_DIR - installation directory
- HPC_NETCDF_BIN - executable binary directory
- HPC_NETCDF_LIB - library directory
- HPC_NETCDF_INC - include directory
Additional Information
To use the NETCDF library, compile the source code with the option:
- -I$HPC_NETCDF_INC
and add the following options to the link step:
- -L$HPC_NETCDF_LIB -lnetcdf
Citation
If you publish research that uses netcdf, you may cite it as follows:
Rew, R. K. and G. P. Davis, "NetCDF: An Interface for Scientific Data Access," IEEE Computer Graphics and Applications, Vol. 10, No. 4, pp. 76-82, July 1990.
Brown, S. A, M. Folk, G. Goucher, and R. Rew, "Software for Portable Scientific Data Management," Computers in Physics, American Institute of Physics, Vol. 7, No. 3, May/June 1993, pp. 304-308.