Difference between revisions of "Exonerate"

Latest revision as of 18:53, 12 August 2022

Exonerate is a generic tool for pairwise sequence comparison.
It allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics.
If you have questions, you can email the Author.

Run module spider exonerate to find out what environment modules are available for this application.

@@ Line 1: / Line 1: @@
-[[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]]
+[[Category:Software]][[Category:Biology]][[Category:Genomics]]
 {|<!--CONFIGURATION: REQUIRED-->
 |{{#vardefine:app|exonerate}}
@@ Line 24: / Line 24: @@
 * It allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics.
 * If you have questions, you can email the [mailto:guy@ebi.ac.uk Author].
-<!--Location-->
-{{App_Location|app={{#var:app}}|{{#var:ver}}}}
-<!--Versions-->
-==Available versions==
-* 2.2
 <!--Modules-->
-{{#if: {{#var: mod}}|==Running the application using modules==
+==Environment Modules==
-{{App_Module|app={{#var:app}}|intel={{#var:intel}}|mpi={{#var:mpi}}}}|}}
+Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
-<!--Add additional HPC_FOO_BIN and other ENV VARIABLES below-->
+==System Variables==
+* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 <!--Run-->
 {{#if: {{#var: exe}}|==How To Run==
 DOUBLE_CLICK_TO_WRITE_INSTRUCTIONS_ON_RUNNING_THE_ACTUAL_BINARY
@@ Line 45: / Line 43: @@
 See the [[{{PAGENAME}}_PBS]] page for {{#var: app}} PBS script examples.|}}
 <!--Policy-->
-{{#if: {{#var: policy}}|==Usage policy==
+{{#if: {{#var: policy}}|==Usage Policy==
 WRITE USAGE POLICY HERE (perhaps templates for a couple of main licensing schemes can be used)
 |}}