Difference between revisions of "R libraries"

Latest revision as of 13:59, 30 June 2017

File R_PACKAGES is missing.

Name	Description

@@ Line 1: / Line 1: @@
-<pre>
+[[Category:Software]]
-affy                    Methods for Affymetrix Oligonucleotide Arrays
+{{#get_file_data:file=R_PACKAGES
-affydata                Affymetrix Data for Demonstration Purpose
+|data=name=Package,description=Title
-affyio                  Tools for parsing Affymetrix data files
+|format=CSV with header
-affyPLM                 Methods for fitting probe-level models
+|cache seconds=3600
-affyQCReport            QC Report Generation for affyBatch objects
+}}
-akima                   Interpolation of irregularly spaced data
+{| class="wikitable"
-annaffy                 Annotation tools for Affymetrix biological
+! Name
-                        metadata
+! Description {{#for_external_table:<nowiki/>
-annotate                Annotation for microarrays
+{{!}}-
-AnnotationDbi           Annotation Database Interface
+{{!}} {{{name}}}
-ape                     Analyses of Phylogenetics and Evolution
+{{!}} {{{description}}}}}
-base                    The R Base Package
+|}
-baySeq                  Empirical Bayesian analysis of patterns of
-                        differential expression in count data
-Biobase                 Biobase: Base functions for Bioconductor
-BiocGenerics            Generic functions for Bioconductor
-BiocInstaller           Install/Update Bioconductor and CRAN Packages
-Biostrings              String objects representing biological
-                        sequences, and matching algorithms
-bitops                  Functions for Bitwise operations
-boot                    Bootstrap Functions (originally by Angelo Canty
-                        for S)
-caTools                 Tools: moving window statistics, GIF, Base64,
-                        ROC AUC, etc.
-class                   Functions for Classification
-cluster                 Cluster Analysis Extended Rousseeuw et al.
-CNVtools                A package to test genetic association with CNV
-                        data
-codetools               Code Analysis Tools for R
-colorspace              Color Space Manipulation
-compiler                The R Compiler Package
-datasets                The R Datasets Package
-DBI                     R Database Interface
-DESeq                   Differential gene expression analysis based on
-                        the negative binomial distribution
-dichromat               Color schemes for dichromats
-digest                  Create cryptographic hash digests of R objects
-doMC                    Foreach parallel adaptor for the multicore
-                        package
-doSNOW                  Foreach parallel adaptor for the snow package
-DynDoc                  Dynamic document tools
-edgeR                   Empirical analysis of digital gene expression
-                        data in R
-foreach                 Foreach looping construct for R
-foreign                 Read Data Stored by Minitab, S, SAS, SPSS,
-                        Stata, Systat, dBase, ...
-gcrma                   Background Adjustment Using Sequence
-                        Information
-gdata                   Various R programming tools for data
-                        manipulation
-gee                     Generalized Estimation Equation solver
-geiger                  Analysis of evolutionary diversification
-genefilter              genefilter: methods for filtering genes from
-                        microarray experiments
-geneplotter             Graphics related functions for Bioconductor
-GenomicRanges           Representation and manipulation of genomic
-                        intervals
-ggplot2                 An implementation of the Grammar of Graphics
-</pre>

Difference between revisions of "R libraries"

Latest revision as of 13:59, 30 June 2017

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