|
|
| (61 intermediate revisions by 2 users not shown) |
| Line 1: |
Line 1: |
| <pre>
| | [[Category:Software]] |
| affy Methods for Affymetrix Oligonucleotide Arrays
| | {{#get_file_data:file=R_PACKAGES |
| affydata Affymetrix Data for Demonstration Purpose
| | |data=name=Package,description=Title |
| affyio Tools for parsing Affymetrix data files
| | |format=CSV with header |
| affyPLM Methods for fitting probe-level models
| | |cache seconds=3600 |
| affyQCReport QC Report Generation for affyBatch objects
| | }} |
| akima Interpolation of irregularly spaced data
| | {| class="wikitable" |
| annaffy Annotation tools for Affymetrix biological
| | ! Name |
| metadata
| | ! Description {{#for_external_table:<nowiki/> |
| annotate Annotation for microarrays
| | {{!}}- |
| AnnotationDbi Annotation Database Interface
| | {{!}} {{{name}}} |
| ape Analyses of Phylogenetics and Evolution
| | {{!}} {{{description}}}}} |
| base The R Base Package
| | |} |
| baySeq Empirical Bayesian analysis of patterns of
| |
| differential expression in count data
| |
| Biobase Biobase: Base functions for Bioconductor
| |
| BiocGenerics Generic functions for Bioconductor
| |
| BiocInstaller Install/Update Bioconductor and CRAN Packages
| |
| Biostrings String objects representing biological
| |
| sequences, and matching algorithms
| |
| bitops Functions for Bitwise operations
| |
| boot Bootstrap Functions (originally by Angelo Canty
| |
| for S)
| |
| caTools Tools: moving window statistics, GIF, Base64,
| |
| ROC AUC, etc.
| |
| class Functions for Classification
| |
| cluster Cluster Analysis Extended Rousseeuw et al.
| |
| CNVtools A package to test genetic association with CNV
| |
| data
| |
| codetools Code Analysis Tools for R
| |
| colorspace Color Space Manipulation
| |
| compiler The R Compiler Package
| |
| datasets The R Datasets Package
| |
| DBI R Database Interface
| |
| DESeq Differential gene expression analysis based on
| |
| the negative binomial distribution
| |
| dichromat Color schemes for dichromats
| |
| digest Create cryptographic hash digests of R objects
| |
| doMC Foreach parallel adaptor for the multicore
| |
| package
| |
| doSNOW Foreach parallel adaptor for the snow package
| |
| DynDoc Dynamic document tools
| |
| edgeR Empirical analysis of digital gene expression
| |
| data in R
| |
| foreach Foreach looping construct for R
| |
| foreign Read Data Stored by Minitab, S, SAS, SPSS,
| |
| Stata, Systat, dBase, ...
| |
| gcrma Background Adjustment Using Sequence
| |
| Information
| |
| gdata Various R programming tools for data
| |
| manipulation
| |
| gee Generalized Estimation Equation solver
| |
| geiger Analysis of evolutionary diversification
| |
| genefilter genefilter: methods for filtering genes from
| |
| microarray experiments
| |
| geneplotter Graphics related functions for Bioconductor
| |
| GenomicRanges Representation and manipulation of genomic
| |
| intervals
| |
| ggplot2 An implementation of the Grammar of Graphics
| |
| </pre>
| |
File R_PACKAGES is missing.