Difference between revisions of "Exonerate"
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Moskalenko (talk | contribs) (Created page with "Category:SoftwareCategory:BioinformaticsCategory:Genomics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|exonerate}} |{{#vardefine:url|http://www.ebi.ac.uk/~guy/e...") |
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| − | [[Category:Software]][[Category: | + | [[Category:Software]][[Category:Biology]][[Category:Genomics]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|exonerate}} | |{{#vardefine:app|exonerate}} | ||
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<!--Description--> | <!--Description--> | ||
{{#if: {{#var: url}}| | {{#if: {{#var: url}}| | ||
| − | {{App_Description|app={{#var:app}}|url={{#var:url}}}}|}} | + | {{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} |
| + | |||
* Exonerate is a generic tool for pairwise sequence comparison. | * Exonerate is a generic tool for pairwise sequence comparison. | ||
* It allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics. | * It allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics. | ||
* If you have questions, you can email the [mailto:guy@ebi.ac.uk Author]. | * If you have questions, you can email the [mailto:guy@ebi.ac.uk Author]. | ||
| − | + | ||
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<!--Modules--> | <!--Modules--> | ||
| − | + | ==Environment Modules== | |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
| − | + | ==System Variables== | |
| + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
<!--Run--> | <!--Run--> | ||
| + | |||
{{#if: {{#var: exe}}|==How To Run== | {{#if: {{#var: exe}}|==How To Run== | ||
DOUBLE_CLICK_TO_WRITE_INSTRUCTIONS_ON_RUNNING_THE_ACTUAL_BINARY | DOUBLE_CLICK_TO_WRITE_INSTRUCTIONS_ON_RUNNING_THE_ACTUAL_BINARY | ||
| Line 44: | Line 43: | ||
See the [[{{PAGENAME}}_PBS]] page for {{#var: app}} PBS script examples.|}} | See the [[{{PAGENAME}}_PBS]] page for {{#var: app}} PBS script examples.|}} | ||
<!--Policy--> | <!--Policy--> | ||
| − | {{#if: {{#var: policy}}|==Usage | + | {{#if: {{#var: policy}}|==Usage Policy== |
WRITE USAGE POLICY HERE (perhaps templates for a couple of main licensing schemes can be used) | WRITE USAGE POLICY HERE (perhaps templates for a couple of main licensing schemes can be used) | ||
|}} | |}} | ||
Latest revision as of 18:53, 12 August 2022
Description
- Exonerate is a generic tool for pairwise sequence comparison.
- It allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics.
- If you have questions, you can email the Author.
Environment Modules
Run module spider exonerate to find out what environment modules are available for this application.
System Variables
- HPC_EXONERATE_DIR - installation directory