Difference between revisions of "PeakSplitter"
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Moskalenko (talk | contribs) (Created page with "=Usage= To load the PeakSplitter environment: $module load peaksplitter =Docs= To show the description: $module spider peaksplitter/1.0 '''After the peaksplitter module is lo…") |
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| − | = | + | __NOTOC__ |
| − | + | __NOEDITSECTION__ | |
| − | + | [[Category:Software]][[Category:Biology]][[Category:ChIP-Seq]] | |
| + | {|<!--Main settings - REQUIRED--> | ||
| + | |{{#vardefine:app|peaksplitter}} | ||
| + | |{{#vardefine:url|http://www.ebi.ac.uk/bertone/software.html}} | ||
| + | |{{#vardefine:exe|}} <!--Present manual instructions for running the software --> | ||
| + | |{{#vardefine:conf|}} <!--Enable config wiki page link - {{#vardefine:conf|1}} = ON/conf|}} = OFF--> | ||
| + | |{{#vardefine:pbs|}} <!--Enable PBS script wiki page link--> | ||
| + | |{{#vardefine:policy|}} <!--Enable policy section --> | ||
| + | |{{#vardefine:testing|}} <!--Enable performance testing/profiling section --> | ||
| + | |{{#vardefine:faq|}} <!--Enable FAQ section --> | ||
| + | |{{#vardefine:citation|}} <!--Enable Reference/Citation section --> | ||
| + | |} | ||
| + | <!-- ######## Template Body ######## --> | ||
| + | <!--Description--> | ||
| + | {{#if: {{#var: url}}| | ||
| + | {{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | ||
| − | = | + | Subdivision of ChIP-seq/ChIP-chip regions into discrete signal peaks. |
| − | To | + | <!--Modules--> |
| − | + | ==Environment Modules== | |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
| − | ''' | + | ==System Variables== |
| − | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | |
| − | + | {{#if: {{#var: exe}}|==How To Run== | |
| − | + | |}} | |
| + | {{#if: {{#var: conf}}|==Configuration== | ||
| + | See the [[{{PAGENAME}}_Configuration]] page for {{#var: app}} configuration details. | ||
| + | |}} | ||
| + | {{#if: {{#var: pbs}}|==PBS Script Examples== | ||
| + | See the [[{{PAGENAME}}_PBS]] page for {{#var: app}} PBS script examples.|}} | ||
| + | {{#if: {{#var: policy}}|==Usage Policy== | ||
| + | WRITE USAGE POLICY HERE (perhaps templates for a couple of main licensing schemes can be used) | ||
| + | |}} | ||
| + | {{#if: {{#var: testing}}|==Performance== | ||
| + | WRITE PERFORMANCE TESTING RESULTS HERE|}} | ||
| + | {{#if: {{#var: faq}}|==FAQ== | ||
| + | *'''Q:''' **'''A:''' | ||
| + | |}} | ||
| + | {{#if: {{#var: citation}}|==Citation== | ||
| + | If you publish research that uses {{#var: app}} you have to cite it as follows: | ||
| + | |}} | ||
Latest revision as of 20:19, 12 August 2022
Description
Subdivision of ChIP-seq/ChIP-chip regions into discrete signal peaks.
Environment Modules
Run module spider peaksplitter to find out what environment modules are available for this application.
System Variables
- HPC_PEAKSPLITTER_DIR - installation directory