Difference between revisions of "MARK"
Jump to navigation
Jump to search
| (7 intermediate revisions by 4 users not shown) | |||
| Line 1: | Line 1: | ||
| − | + | [[Category:Software]][[Category:Data Science]][[Category:Math]] | |
| + | {|<!--Main settings - REQUIRED--> | ||
| + | |{{#vardefine:app|mark}} | ||
| + | |{{#vardefine:url|http://www.phidot.org/software/mark/index.html}} | ||
| + | |{{#vardefine:exe|}} <!--Present manual instructions for running the software --> | ||
| + | |{{#vardefine:conf|}} <!--Enable config wiki page link - {{#vardefine:conf|1}} = ON/conf|}} = OFF--> | ||
| + | |{{#vardefine:pbs|}} <!--Enable PBS script wiki page link--> | ||
| + | |{{#vardefine:policy|}} <!--Enable policy section --> | ||
| + | |{{#vardefine:testing|}} <!--Enable performance testing/profiling section --> | ||
| + | |{{#vardefine:faq|}} <!--Enable FAQ section --> | ||
| + | |{{#vardefine:citation|}} <!--Enable Reference/Citation section --> | ||
| + | |} | ||
| + | <!-- ######## Template Body ######## --> | ||
| + | <!--Description--> | ||
| + | {{#if: {{#var: url}}| | ||
| + | {{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | ||
| − | MARK is | + | Program MARK, developed and maintained by Gary White (Colorado State University) is the most flexible, widely used application currently available for parameter estimation using data from marked individuals. |
| − | + | We have the Linux MARK numerical routines and the [http://www.phidot.org/software/mark/rmark/linux/ RMark R library] installed. The traditional Windows (TM) MARK software cannot be run under Linux and is not available. | |
| − | + | ||
| − | + | The [http://www.phidot.org/software/mark/docs/book/pdf/mark_book.zip MARK book] manual is available for download. | |
| + | <!--Modules--> | ||
| + | ==Environment Modules== | ||
| + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
| + | ==System Variables== | ||
| + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
| + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
| + | {{#if: {{#var: exe}}|==How To Run== | ||
| + | WRITE INSTRUCTIONS ON RUNNING THE ACTUAL BINARY|}} | ||
| + | {{#if: {{#var: conf}}|==Configuration== | ||
| + | See the [[{{PAGENAME}}_Configuration]] page for {{#var: app}} configuration details.|}} | ||
| + | {{#if: {{#var: pbs}}|==PBS Script Examples== | ||
| + | See the [[{{PAGENAME}}_PBS]] page for {{#var: app}} PBS script examples.|}} | ||
| + | {{#if: {{#var: policy}}|==Usage Policy== | ||
| + | WRITE USAGE POLICY HERE (perhaps templates for a couple of main licensing schemes can be used)|}} | ||
| + | {{#if: {{#var: testing}}|==Performance== | ||
| + | WRITE PERFORMANCE TESTING RESULTS HERE|}} | ||
| + | {{#if: {{#var: faq}}|==FAQ== | ||
| + | *'''Q:''' **'''A:'''|}} | ||
| + | {{#if: {{#var: citation}}|==Citation== | ||
| + | If you publish research that uses {{{app}}} you have to cite it as follows: | ||
| + | WRITE CITATION HERE | ||
| + | |}} | ||
| + | __NOTOC____NOEDITSECTION__ | ||
Latest revision as of 18:22, 18 August 2022
Description
Program MARK, developed and maintained by Gary White (Colorado State University) is the most flexible, widely used application currently available for parameter estimation using data from marked individuals.
We have the Linux MARK numerical routines and the RMark R library installed. The traditional Windows (TM) MARK software cannot be run under Linux and is not available.
The MARK book manual is available for download.
Environment Modules
Run module spider mark to find out what environment modules are available for this application.
System Variables
- HPC_MARK_DIR - installation directory
- HPC_MARK_BIN - executable directory