Difference between revisions of "Emu"
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(Created page with "Category:SoftwareCategory:BiologyCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|emu}} |{{#vardefine:url|https://github.com/treangenlab/e...") |
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* HPC_{{uc:{{#var:app}}}}_BIN - executable directory | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
* EMU_DATABASE_DIR - database directory | * EMU_DATABASE_DIR - database directory | ||
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* RDB_PREBUILT_DB - rdb prebuilt database | * RDB_PREBUILT_DB - rdb prebuilt database | ||
* SILVA_PREBUILT_DB - silva prebuilt database | * SILVA_PREBUILT_DB - silva prebuilt database | ||
Latest revision as of 18:48, 21 August 2024
Description
Emu: species-level taxonomic abundance for full-length 16S reads
Emu is a relative abundance estimator for 16S genomic sequences. The method is optimized for error-prone full-length reads, but can also be utilized for short-read data.
Environment Modules
Run module spider emu to find out what environment modules are available for this application.
System Variables
- HPC_EMU_DIR - installation directory
- HPC_EMU_BIN - executable directory
- EMU_DATABASE_DIR - database directory
- RDB_PREBUILT_DB - rdb prebuilt database
- SILVA_PREBUILT_DB - silva prebuilt database
- UNITE_FUNGI_PREBUILT_DB - unite-fungi prebuilt database
- UNITE_ALL_PREBUILT_DB - unite-all prebuilt database