Difference between revisions of "Cliquesnv"

Latest revision as of 20:24, 1 May 2024

Description

cliquesnv website

Scalable reconstruction of intra-host viral populations from NGS reads

Environment Modules

Run module spider cliquesnv to find out what environment modules are available for this application.

System Variables

HPC_CLIQUESNV_DIR - installation directory
HPC_CLIQUESNV_BIN - executable directory

Additional Information

For usage:

cliquesnv --help

cliquesnv -m [method] [options]

Available methods: snv-pacbio, snv-illumina, snv-pacbio-vc, snv-illumina-vc

Citation

If you publish research that uses cliquesnv you have to cite it as follows:

Knyazev S, Tsyvina V, Shankar A, Melnyk A, Artyomenko A, Malygina T, Porozov YB, Campbell EM, Switzer WM, Skums P, Mangul S, Zelikovsky A. Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction. Nucleic Acids Res. 2021 Jul 2:gkab576. doi: 10.1093/nar/gkab576. Epub ahead of print. PMID: 34214168.

https://pubmed.ncbi.nlm.nih.gov/34214168/

@@ Line 18: / Line 18: @@
 {{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}}
-DESCRIPTION
+Scalable reconstruction of intra-host viral populations from NGS reads
 <!--Modules-->
@@ Line 33: / Line 33: @@
 {{#if: {{#var: exe}}|==Additional Information==
-WRITE_ADDITIONAL_INSTRUCTIONS_ON_RUNNING_THE_SOFTWARE_IF_NECESSARY
+For usage:
+cliquesnv --help
+cliquesnv -m [method] [options]
+Available methods: snv-pacbio, snv-illumina, snv-pacbio-vc, snv-illumina-vc
 |}}
@@ Line 43: / Line 50: @@
 {{#if: {{#var: policy}}|==Usage Policy==
-WRITE USAGE POLICY HERE (Licensing, usage, access).
+WRITE SOMETHING HERE
 |}}