Difference between revisions of "CryoSPARC"
Moskalenko (talk | contribs) (Created page with "Category:Software {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|cryosparc}} |{{#vardefine:url|https://cryosparc.com/}} <!--CONFIGURATION: OPTIONAL (|1}} means it's ON...") |
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|{{#vardefine:conf|}} <!--CONFIGURATION--> | |{{#vardefine:conf|}} <!--CONFIGURATION--> | ||
|{{#vardefine:modules|}} <!--MODULES--> | |{{#vardefine:modules|}} <!--MODULES--> | ||
| − | |{{#vardefine:exe|}} <!--ADDITIONAL INFO--> | + | |{{#vardefine:exe|1}} <!--ADDITIONAL INFO--> |
|{{#vardefine:job|}} <!--JOB SCRIPTS--> | |{{#vardefine:job|}} <!--JOB SCRIPTS--> | ||
|{{#vardefine:policy|}} <!--POLICY--> | |{{#vardefine:policy|}} <!--POLICY--> | ||
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{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | {{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | ||
| − | + | CryoSPARC is a state of the art scientific software platform for cryo-electron microscopy (cryo-EM) used in research and drug discovery pipelines. | |
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| + | An individual approach to running CryoSPARC on HiPerGator is to install it in a 'standalone' mode into a personal directory tree and run it inside a SLURM job while accessing its web front-end from a browser in Open OnDemand or via an ssh tunnel and using the job resources to run the analyses or configuring cluster access to submit jobs. | ||
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| + | A group can also purchase a [[Web_Application_Hosting|PubApps instance]] and collectively use a pre-configured instance of CryoSPARC set up by RC staff that allows shared access to group's HiPerGator resources (NCU+GPU) from a single allocation (account + qos) from the UF Network (Campus + VPN). | ||
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| + | Each CryoSPARC install requires a license. See [https://guide.cryosparc.com/setup-configuration-and-management/how-to-download-install-and-configure/obtaining-a-license-id obtaining a license id] document for details. | ||
<!--Modules--> | <!--Modules--> | ||
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{{#if: {{#var: exe}}|==Additional Information== | {{#if: {{#var: exe}}|==Additional Information== | ||
| − | + | See [[Updating CryoSPARC]] for a guide on updating your cryosparc instance on your own. | |
|}} | |}} | ||
Latest revision as of 18:05, 10 May 2024
Description
CryoSPARC is a state of the art scientific software platform for cryo-electron microscopy (cryo-EM) used in research and drug discovery pipelines.
An individual approach to running CryoSPARC on HiPerGator is to install it in a 'standalone' mode into a personal directory tree and run it inside a SLURM job while accessing its web front-end from a browser in Open OnDemand or via an ssh tunnel and using the job resources to run the analyses or configuring cluster access to submit jobs.
A group can also purchase a PubApps instance and collectively use a pre-configured instance of CryoSPARC set up by RC staff that allows shared access to group's HiPerGator resources (NCU+GPU) from a single allocation (account + qos) from the UF Network (Campus + VPN).
Each CryoSPARC install requires a license. See obtaining a license id document for details.
Additional Information
See Updating CryoSPARC for a guide on updating your cryosparc instance on your own.