Difference between revisions of "HUMAnN"

Latest revision as of 14:26, 11 October 2022

Description

HUMAnN 3.0 is the next iteration of HUMAnN, the HMP Unified Metabolic Analysis Network. HUMAnN is a method for efficiently and accurately profiling the abundance of microbial metabolic pathways and other molecular functions from metagenomic or metatranscriptomic sequencing data.

Environment Modules

Run module spider humann to find out what environment modules are available for this application.

System Variables

HPC_HUMANN_DIR - installation directory
HPC_HUMANN_BIN - executable directory
HPC_HUMANN_REF - database directory

Citation

If you publish research that uses humann you have to cite it as follows:

Francesco Beghini, Lauren J McIver, Aitor Blanco-Mìguez, Leonard Dubois, Francesco Asnicar, Sagun Maharjan, Ana Mailyan, Andrew Maltez Thomas, Paolo Manghi, Mireia Valles-Colomer, George Weingart, Yancong Zhang, Moreno Zolfo, Curtis Huttenhower, Eric A Franzosa, Nicola Segata.

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

eLife 2021;10:e65088

@@ Line 1: / Line 1: @@
-[[Category:Software]][[Category:Sequencing]][[Category:Microbial Ecology]]
+[[Category:Software]][[Category:Sequencing]][[Category:Biology]]
 {|<!--CONFIGURATION: REQUIRED-->
-|{{#vardefine:app|HUMAnN}}
+|{{#vardefine:app|humann}}
 |{{#vardefine:url|http://huttenhower.sph.harvard.edu/humann}}
 <!--CONFIGURATION: OPTIONAL (|1}} means it's ON)-->
@@ Line 59: / Line 59: @@
 If you publish research that uses {{#var:app}} you have to cite it as follows:
-Francesco Beghini1 ,Lauren J McIver2 ,Aitor Blanco-Mìguez1 ,Leonard Dubois1 ,Francesco Asnicar1 ,Sagun Maharjan2,3 ,Ana Mailyan2,3 ,Andrew Maltez Thomas1 ,Paolo Manghi1 ,Mireia Valles-Colomer1 ,George Weingart2,3 ,Yancong Zhang2,3 ,Moreno Zolfo1 ,Curtis Huttenhower2,3 ,Eric A Franzosa2,3 ,Nicola Segata1,4
+Francesco Beghini, Lauren J McIver, Aitor Blanco-Mìguez, Leonard Dubois, Francesco Asnicar, Sagun Maharjan, Ana Mailyan, Andrew Maltez Thomas, Paolo Manghi, Mireia Valles-Colomer, George Weingart, Yancong Zhang, Moreno Zolfo, Curtis Huttenhower, Eric A Franzosa, Nicola Segata.
 [https://elifesciences.org/articles/65088 Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3]