Difference between revisions of "Olego"
Jump to navigation
Jump to search
| Line 1: | Line 1: | ||
| − | [[Category:Software]][[Category:Biology]][[Category:NGS]] | + | [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|olego}} | |{{#vardefine:app|olego}} | ||
Latest revision as of 17:44, 19 August 2022
Description
OLego is a program specifically designed for de novo spliced mapping of mRNA-seq reads. OLego adopts a seed-and-extend scheme, and does not rely on a separate external mapper. It achieves high sensitivity of junction detection by strategic searches with very small seeds (12-14 nt), efficiently mapped using Burrows-Wheeler transform (BWT) and FM-index. This also makes it particularly sensitive for discovering small exons. OLego supports multi-threading to allow for fast processing of large-scale data.
Environment Modules
Run module spider olego to find out what environment modules are available for this application.
System Variables
- HPC_OLEGO_DIR - installation directory