Difference between revisions of "MAFFT"
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|{{#vardefine:app|mafft}} | |{{#vardefine:app|mafft}} | ||
Latest revision as of 20:23, 15 August 2022
Description
MAFFT is a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of <∼200 sequences), FFT-NS-2 (fast; for alignment of <∼10,000 sequences), etc.
Environment Modules
Run module spider mafft to find out what environment modules are available for this application.
System Variables
- HPC_MAFFT_DIR - installation directory
Additional Information
MAFFT is compiled to run on multiple cores, use the --thread <cores> option to specify the number of cores to use. Make sure that this number corresponds to the resources requested in your #PBS -l nodes=1:ppn=<cores> statement.