Difference between revisions of "MicrobeAnnotator"
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(Created page with "Category:SoftwareCategory:Microbe AnnotationCategory:Biology {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|microbeannotator}} |{{#vardefine:url|https://github...") |
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| − | [[Category:Software]][[Category: | + | [[Category:Software]][[Category:Annotation]][[Category:Biology]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|microbeannotator}} | |{{#vardefine:app|microbeannotator}} | ||
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
* HPC_{{uc:{{#var:app}}}}_BIN - executable directory | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
| + | * HPC_{{uc:{{#var:app}}}}_REF - reference database | ||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 19:02, 10 October 2022
Description
Easy-to-use pipeline for the comprehensive metabolic annotation of microbial genomes.
Environment Modules
Run module spider microbeannotator to find out what environment modules are available for this application.
System Variables
- HPC_MICROBEANNOTATOR_DIR - installation directory
- HPC_MICROBEANNOTATOR_BIN - executable directory
- HPC_MICROBEANNOTATOR_REF - reference database
Citation
If you publish research that uses microbeannotator you have to cite it as follows: