Difference between revisions of "Metaphlan"
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(Created page with "Category:SoftwareCategory: Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|Metaphlan}} |{{#vardefine:url|https://github.com/biobakery/MetaPhlAn}} <!--...") |
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[[Category:Software]][[Category: Phylogenetics]] | [[Category:Software]][[Category: Phylogenetics]] | ||
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
| − | |{{#vardefine:app| | + | |{{#vardefine:app|metaphlan}} |
|{{#vardefine:url|https://github.com/biobakery/MetaPhlAn}} | |{{#vardefine:url|https://github.com/biobakery/MetaPhlAn}} | ||
<!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | <!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | ||
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
| + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
| + | * METAPHLAN_BOWTIE2_DB - reference database | ||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 15:21, 26 August 2022
Description
MetaPhlAn is a tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data.
Environment Modules
Run module spider metaphlan to find out what environment modules are available for this application.
System Variables
- HPC_METAPHLAN_DIR - installation directory
- HPC_METAPHLAN_BIN - executable directory
- METAPHLAN_BOWTIE2_DB - reference database