Difference between revisions of "Draft:UFRC Help and Documentation Testa"

Latest revision as of 17:49, 31 January 2023

Welcome to the University of Florida Research Computing Help and Documentation site. General information, announcements, and purchase request forms are on our main web site. The information here is focused on particular applications, services, and usage examples. Provide Feedback.

For New Users

Getting Started : This page is intended to help new clients get started on HiPerGator.
Training and Events: Material for learning HPG, including AI
Training Videos: Material for learning HPG, including AI
Interactive Development and Testing: available options for interactive or small-scale testing work.
Practical Storage Use: Here we discuss practical use of the various shared storage systems on HiPerGator.

Help

How To Get Help
Submit a Support Request
AI Help: resources for understanding/improving ML tasks.
FAQ:
HiPerGator Metrics:

Access

GPU Access
Multi-Factor Authentication: How to access HPG with Duo.
SSH Multiplexing: allows multiple connections to HPG without using Duo for every one.
Blocked Accounts: how to know if/why you are blocked.
Federated Access and Login

Transfer Data - Moving data to/from HPG

Samba Access: most commonly used by UFRC clients for drive mapping to HiPerGator filesystems from their desktops.
Globus: best method if your data files are large, >1GB
Sharing Within A Cluster:
Rsync:

Interfaces

Jupyter (Python, R): web-based development environment for teaching/testing/developing code.
Galaxy Genomics Framework: web-based framework for biological computing.
OnDemand (Matlab, RStudio,...): web interface for starting and attaching to HiPerGator jobs.
Conda and Jupyter Kernels
How To Run GUI Apps

Software and Reference Data

Installed Applications: List of HPG programs.
HiPerGator ufrc Tools: various internal/external tools in the ufrc module.
Environment Modules System: explains RC's use of modules for containing programs.
Reference Data: repository of reference data accessible to everyone, including AI data.
- AI Reference Datasets

Scheduler

SLURM Commands: useful list includes submitting, checking, and cancelling jobs.
Account and QOS Limits Under SLURM: how HPG prioritizes jobs/resources
Available Node Features: how to specify hardware such as processor families/models.
SLURM Job Script Examples
SLURM Job Arrays: best way to submit a number of identical jobs
GPU Access:

@@ Line 4: / Line 4: @@
 |style="vertical-align:top; color: #444444;width:50%;"|
-==[[For New Users]] [[Image:Setup.png|left|frameless|upright=0.1]]==
+==[[:Category:Essentials|For New Users]] [[Image:Setup.png|left|frameless|upright=0.1]]==
 {| width="100%"
 *[[Getting Started ]]: This page is intended to help new clients get started on HiPerGator.
-*[[Training|Training, Events, Videos]]: Material for learning HPG, including AI
+*[[Trainings|Training and Events]]: Material for learning HPG, including AI
-*[[New user training]]: Expands upon the content provided in the [https://coursera.org/groups/hipergator-account-training-c6fao/invitation HiPerGator Account Training in Coursera]
+*[[Training Videos]]: Material for learning HPG, including AI
 *[[Development_and_Testing|Interactive Development and Testing]]: available options for interactive or small-scale testing work.
 *[[Storage|Practical Storage Use]]:  Here we discuss practical use of the various shared storage systems on HiPerGator.
@@ Line 18: / Line 18: @@
 * <span class="plainlinks">[https://support.rc.ufl.edu/enter_bug.cgi Submit a Support Request]</span>
 * [[AI Help|AI Help]]: resources for understanding/improving ML tasks.
+* [[FAQ]]:
+* [[HiPerGator Metrics]]:
 |}
-==[[:Category:Scheduler|Scheduler]] [[Image:Scheduler.png|left|frameless|upright=0.1]]==
+==Access [[Image:Access.png|left|frameless|upright=0.1]]==
 {| width="100%"
-* [[SLURM_Commands|SLURM Commands]]: useful list includes submitting, checking, and cancelling jobs.
+* [[GPU_Access|GPU Access]]
-* [[Account_and_QOS_limits_under_SLURM|Account and QOS Limits Under SLURM]]: how HPG prioritizes jobs/resources
+* [[Authentication With MFA|Multi-Factor Authentication]]: How to access HPG with Duo.
-* [[Large-Memory_SMP_Servers|Big Memory Partition]]: RC's big memory servers and how use them.
+* [[SSH Multiplexing]]: allows multiple connections to HPG without using Duo for every one.
-* [[Available Node Features]]: how to specify hardware such as processor families/models.
+* [[Blocked Accounts]]: how to know if/why you are blocked.
-* [[Sample_SLURM_Scripts|SLURM Job Script Examples]]
+* [[Federated_Account_Request|Federated Access]] and [[Federated_login|Login]]
-* [[SLURM_Job_Arrays|SLURM Job Arrays]]: best way to submit a number of identical jobs
 |}
 ==[[Transfer Data]] - Moving data to/from HPG [[Image:Transfer.png|left|frameless|upright=0.1]]==
 {| width="100%"
+* [[Samba Access]]: most commonly used by UFRC clients for drive mapping to HiPerGator filesystems from their desktops.
 * [[Globus]]: best method if your data files are large, >1GB
-* [[Samba Access]]: most commonly used by UFRC clients for drive mapping to HiPerGator filesystems from their desktops.
+* [[Sharing Within A Cluster]]:
+* [[Rsync]]:
 |}
@@ Line 39: / Line 42: @@
 |style="vertical-align:top;border:none;width:50%;"|
-==[[Access]] [[Image:Access.png|left|frameless|upright=0.1]]==
 {| width="100%"
-* [[GPU_Access|GPU Access]]
+==Interfaces [[Image:Inter.png|left|frameless|upright=0.1]]==
-* [[Authentication With MFA|Multi-Factor Authentication]]: How to access HPG with Duo.
-* [[SSH Multiplexing]]: allows multiple connections to HPG without using Duo for every one.
-* [[Blocked Accounts]]: how to know if/why you are blocked.
-|}
-{| width="100%"
-==[[Interfaces]] [[Image:Inter.png|left|frameless|upright=0.1]]==
 * [[Jupyter_Notebooks| Jupyter (Python, R)]]: web-based development environment for teaching/testing/developing code.
 * [[Galaxy|Galaxy Genomics Framework]]: web-based framework for biological computing.
@@ Line 56: / Line 50: @@
 * [[GUI Programs|How To Run GUI Apps]]
 |}
-==[[Software and Reference Data]] [[Image:Software.png|left|frameless|upright=0.1]]==
+==[[:Category:Applications|Software and Reference Data]] [[Image:Software.png|left|frameless|upright=0.1]]==
 {| width="100%"
 * [[Applications|Installed Applications]]: List of HPG programs.
@@ Line 64: / Line 58: @@
 ** [[AI Reference Datasets]]
 |}
-==[[Specific Research Areas]] [[Image:Areas.png|left|frameless|upright=0.1]]==
+==[[:Category:Scheduler|Scheduler]] [[Image:Scheduler.png|left|frameless|upright=0.1]]==
+{| width="100%"
+* [[SLURM_Commands|SLURM Commands]]: useful list includes submitting, checking, and cancelling jobs.
+* [[Account_and_QOS_limits_under_SLURM|Account and QOS Limits Under SLURM]]: how HPG prioritizes jobs/resources
+* [[Available Node Features]]: how to specify hardware such as processor families/models.
+* [[Sample_SLURM_Scripts|SLURM Job Script Examples]]
+* [[SLURM_Job_Arrays|SLURM Job Arrays]]: best way to submit a number of identical jobs
+* [[GPU Access]]:
+|}
+==Specific Research Areas [[Image:Areas.png|left|frameless|upright=0.1]]==
 {| width="100%"
 * [[Biology|Biology]]
 * [[Nlp|Natural Language Processing]]
+* [[Computer Vision]]
 |}
 |}
 __NOTOC__