Difference between revisions of "NextGenMap"
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|{{#vardefine:app|nextgenmap}} | |{{#vardefine:app|nextgenmap}} | ||
Latest revision as of 16:24, 19 August 2022
Description
NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime. This allows analyzing large-scale datasets even with increased SNP rates or higher error rates (e.g. caused by specialized experimental protocols) and avoids bias…
Environment Modules
Run module spider nextgenmap to find out what environment modules are available for this application.
System Variables
- HPC_NEXTGENMAP_DIR - installation directory
- HPC_NEXTGENMAP_BIN - executable directory
Citation
If you publish research that uses nextgenmap you have to cite it as follows: