Difference between revisions of "StringMLST"
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| − | [[Category:Software]][[Category:Biology | + | [[Category:Software]][[Category:Biology]][[Category:ChIP-Seq]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|stringmlst}} | |{{#vardefine:app|stringmlst}} | ||
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<!--Modules--> | <!--Modules--> | ||
| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
Latest revision as of 20:45, 12 August 2022
Description
Fast k-mer based tool for multi locus sequence typing (MLST) stringMLST is a tool for detecting the MLST of an isolate directly from the genome sequencing reads. stringMLST predicts the ST of an isolate in a completely assembly and alignment free manner. The tool is designed in a light-weight, platform-independent fashion with minimum dependencies.
Environment Modules
Run module spider stringmlst to find out what environment modules are available for this application.
System Variables
- HPC_STRINGMLST_DIR - installation directory
- HPC_STRINGMLST_BIN - executable directory