Difference between revisions of "Vt"
Jump to navigation
Jump to search
| Line 21: | Line 21: | ||
<!--Modules--> | <!--Modules--> | ||
| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
| − | |||
| − | |||
| − | < | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
Latest revision as of 16:13, 10 June 2022
Description
vt is a variant tool set that discovers short variants from Next Generation Sequencing data.
Environment Modules
Run module spider vt to find out what environment modules are available for this application.
System Variables
- HPC_VT_DIR - installation directory
- HPC_VT_BIN - executable directory
Citation
If you publish research that uses vt you have to cite it as follows: