Difference between revisions of "Fastq-pair"
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(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|Fastq-pair}} |{{#vardefine:url|https://github.com/linsalrob/fastq-pair}} <!-...") |
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|{{#vardefine:testing|}} <!--PROFILING--> | |{{#vardefine:testing|}} <!--PROFILING--> | ||
|{{#vardefine:faq|}} <!--FAQ--> | |{{#vardefine:faq|}} <!--FAQ--> | ||
| − | |{{#vardefine:citation|}} <!--CITATION--> | + | |{{#vardefine:citation|1}} <!--CITATION--> |
|{{#vardefine:installation|}} <!--INSTALLATION--> | |{{#vardefine:installation|}} <!--INSTALLATION--> | ||
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
| + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
| + | |||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
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If you publish research that uses {{#var:app}} you have to cite it as follows: | If you publish research that uses {{#var:app}} you have to cite it as follows: | ||
| − | + | [https://www.biorxiv.org/content/10.1101/552885v1 fastq-pair: efficient synchronization of paired-end fastq files. 2019. Robert A Edwards and John A Edwards. bioRxiv 552885; doi: https://doi.org/10.1101/552885] | |
|}} | |}} | ||
Latest revision as of 16:33, 27 May 2022
Description
Rewrite paired end fastq files to make sure that all reads have a mate and to separate out singletons.
Environment Modules
Run module spider Fastq-pair to find out what environment modules are available for this application.
System Variables
- HPC_FASTQ-PAIR_DIR - installation directory
- HPC_FASTQ-PAIR_BIN - executable directory
Citation
If you publish research that uses Fastq-pair you have to cite it as follows: