Difference between revisions of "CellRanger-ATAC"
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(Created page with "Category:SoftwareCategory:BiologyCategory:BioinformaticsCategory:NGSCategory:RNA-Seq {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|CellRanger-ATAC}} |...") |
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| − | [[Category:Software]][[Category:Biology | + | [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
| − | |{{#vardefine:app| | + | |{{#vardefine:app|cellrangeratac}} |
|{{#vardefine:url|https://support.10xgenomics.com/single-cell-atac/software/overview/welcome}} | |{{#vardefine:url|https://support.10xgenomics.com/single-cell-atac/software/overview/welcome}} | ||
<!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | <!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | ||
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{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | {{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | ||
| − | The Chromium Single Cell ATAC Software Suite is a set of software applications for analyzing and visualizing single cell chromatin accessibility data produced by the 10x Chromium Platform. The software suite includes Cell Ranger ATAC and Loupe | + | The Chromium Single Cell ATAC Software Suite is a set of software applications for analyzing and visualizing single cell chromatin accessibility data produced by the 10x Chromium Platform. The software suite includes Cell Ranger ATAC and Loupe Browser |
<!--Modules--> | <!--Modules--> | ||
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
| + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
| + | |||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 13:25, 15 August 2022
Description
The Chromium Single Cell ATAC Software Suite is a set of software applications for analyzing and visualizing single cell chromatin accessibility data produced by the 10x Chromium Platform. The software suite includes Cell Ranger ATAC and Loupe Browser
Environment Modules
Run module spider cellrangeratac to find out what environment modules are available for this application.
System Variables
- HPC_CELLRANGERATAC_DIR - installation directory
- HPC_CELLRANGERATAC_BIN - executable directory