Difference between revisions of "Popcorn"
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(Created page with "Category:Software {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|popcorn}} |{{#vardefine:url|https://github.com/brielin/Popcorn}} <!--CONFIGURATION: OPTIONAL (|1}} mea...") |
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| − | <code>$ python /apps/popcorn/20211104/lib/popcorn/__main__.py compute --bfile / | ||
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Latest revision as of 18:49, 21 August 2022
Description
Popcorn is a program for estimaing the correlation of causal variant effect sizes across populations in GWAS.
Environment Modules
Run module spider popcorn to find out what environment modules are available for this application.
System Variables
- HPC_POPCORN_DIR - installation directory
- HPC_POPCORN_BIN - executable directory
Usage Examples
$ python /apps/popcorn/20211104/lib/popcorn/__main__.py compute --bfile /path/to/input/EAS_ref EAS.cscore