Difference between revisions of "Artemis"
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Latest revision as of 14:53, 12 August 2022
Description
Artemis is a free genome browser and annotation tool that allows visualisation of sequence features, next generation data and the results of analyses within the context of the sequence, and also its six-frame translation.
Environment Modules
Run module spider artemis to find out what environment modules are available for this application.
System Variables
- HPC_ARTEMIS_DIR - installation directory
- HPC_ARTEMIS_BIN - executable directory
Citation
If you publish research that uses artemis you have to cite it as follows:
Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data. Carver T, Harris SR, Berriman M, Parkhill J and McQuillan JA Bioinformatics (Oxford, England) 2012;28;4;464-9 PUBMED: 22199388; PMC: 3278759; DOI: 10.1093/bioinformatics/btr703
Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database. Carver T, Berriman M, Tivey A, Patel C, Böhme U et al. Bioinformatics (Oxford, England) 2008;24;23;2672-6 PUBMED: 18845581; PMC: 2606163; DOI: 10.1093/bioinformatics/btn529
Viewing and annotating sequence data with Artemis. Berriman M and Rutherford K Briefings in bioinformatics 2003;4;2;124-32 PUBMED: 12846394
Artemis: sequence visualization and annotation. Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream MA and Barrell B Bioinformatics (Oxford, England) 2000;16;10;944-5 PUBMED: 11120685