Difference between revisions of "Bakta"
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(Created page with "Category:SoftwareCategory:Phylogenomics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|Bakta}} |{{#vardefine:url|https://github.com/oschwengers/bakta}} <!--CONFIGU...") |
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| − | [[Category:Software]][[Category: | + | [[Category:Software]][[Category:Genomics]][[Category:Biology]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|Bakta}} | |{{#vardefine:app|Bakta}} | ||
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
* HPC_{{uc:{{#var:app}}}}_BIN - executable directory | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
| + | * BAKTA_DB - reference database directory | ||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 15:28, 12 August 2022
Description
Bakta is a tool for the rapid & standardized annotation of bacterial genomes and plasmids from both isolates and MAGs. It provides dbxref-rich and sORF-including annotations in machine-readable JSON & bioinformatics standard file formats for automatic downstream analysis.
Environment Modules
Run module spider Bakta to find out what environment modules are available for this application.
System Variables
- HPC_BAKTA_DIR - installation directory
- HPC_BAKTA_BIN - executable directory
- BAKTA_DB - reference database directory
Citation
If you publish research that uses Bakta you have to cite it as follows: