Difference between revisions of "Pseudofinder"
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(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|pseudofinder}} |{{#vardefine:url|https://github.com/filip-husnik/pseudofinde...") |
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
| + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
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<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 13:41, 11 October 2021
Description
Pseudofinder is a bioinformatics tool that detects pseudogene candidates from annotated genbank files of bacterial and archaeal genomes.
It has been tested mostly on genbank (.gbf/.gbk) files annotated by Prokka with the --compliant flag (i.e. including both /gene and /CDS annotations).
Environment Modules
Run module spider pseudofinder to find out what environment modules are available for this application.
System Variables
- HPC_PSEUDOFINDER_DIR - installation directory
- HPC_PSEUDOFINDER_BIN - executable directory
Citation
If you publish research that uses pseudofinder you have to cite it as follows: