Difference between revisions of "AGfusion"
Jump to navigation
Jump to search
(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|REPLACE}} |{{#vardefine:url|REPLACE}} <!--CONFIGURATION: OPTIONAL (|1}} mean...") |
|||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
[[Category:Software]][[Category:Phylogenetics]] | [[Category:Software]][[Category:Phylogenetics]] | ||
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
| − | |{{#vardefine:app| | + | |{{#vardefine:app|agfusion}} |
| − | |{{#vardefine:url| | + | |{{#vardefine:url|https://github.com/murphycj/AGFusion}} |
<!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | <!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | ||
|{{#vardefine:conf|}} <!--CONFIGURATION--> | |{{#vardefine:conf|}} <!--CONFIGURATION--> | ||
Latest revision as of 22:26, 26 August 2020
Description
AGFusion is a python package for annotating gene fusions from the human or mouse genomes. AGFusion simply needs the reference genome, the two gene partners, and the fusion junction coordinates as input, and outputs the following:
Environment Modules
Run module spider agfusion to find out what environment modules are available for this application.
System Variables
- HPC_AGFUSION_DIR - installation directory
- HPC_AGFUSION_BIN - executable directory
Citation
If you publish research that uses agfusion you have to cite it as follows:
https://www.biorxiv.org/content/10.1101/080903v1