Difference between revisions of "TrackVis/DTK"
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| − | [[Category:Software]][[Category: | + | [[Category:Software]][[Category:Biology]][[Category:Imaging]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|trackvis}} | |{{#vardefine:app|trackvis}} | ||
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<!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | <!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | ||
|{{#vardefine:conf|}} <!--CONFIGURATION--> | |{{#vardefine:conf|}} <!--CONFIGURATION--> | ||
| − | |{{#vardefine:exe|}} <!--ADDITIONAL INFO--> | + | |{{#vardefine:exe|1}} <!--ADDITIONAL INFO--> |
| − | |{{#vardefine: | + | |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> |
|{{#vardefine:policy|}} <!--POLICY--> | |{{#vardefine:policy|}} <!--POLICY--> | ||
|{{#vardefine:testing|}} <!--PROFILING--> | |{{#vardefine:testing|}} <!--PROFILING--> | ||
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TrackVis is a software tool that can visualize and analyze fiber track data from diffusion MR imaging (DTI/DSI/HARDI/Q-Ball) tractography. Features of TrackVis include: | TrackVis is a software tool that can visualize and analyze fiber track data from diffusion MR imaging (DTI/DSI/HARDI/Q-Ball) tractography. Features of TrackVis include: | ||
| − | * Cross-platform. Works on Windows, Mac OS X and Linux with native look and feel. | + | *Cross-platform. Works on Windows, Mac OS X and Linux with native look and feel. |
| − | * A variety of track filters (track selecting methods) allowing users to explore and locate specific bundles with ease. | + | *A variety of track filters (track selecting methods) allowing users to explore and locate specific bundles with ease. |
| − | * Multiple rendering modes with customizable scalar-driven color codes. | + | *Multiple rendering modes with customizable scalar-driven color codes. |
| − | * Real-time parameter adjustment and 3D render. | + | *Real-time parameter adjustment and 3D render. |
| − | * Open format of the track data file allowing users to integrate customized scalar data into the track file and visualize and analyze it. Save and restore scenes in XML style scene file. | + | *Open format of the track data file allowing users to integrate customized scalar data into the track file and visualize and analyze it. Save and restore scenes in XML style scene file. |
| − | * Statistical scalar analysis of tracks and ROIs. | + | *Statistical scalar analysis of tracks and ROIs. |
| − | * Synchronized real-time multiple dataset analysis and display allowing time-point and/or subject comparison. Synchronized analysis and display on same dataset can also be performed in real-time remotely over the network. | + | *Synchronized real-time multiple dataset analysis and display allowing time-point and/or subject comparison. *Synchronized analysis and display on same dataset can also be performed in real-time remotely over the network. |
| − | * Upfront in-line parameter adjustment in real-time. No tedious pop-up dialogs. | + | *Upfront in-line parameter adjustment in real-time. No tedious pop-up dialogs. |
| − | |||
<!--Modules--> | <!--Modules--> | ||
==Environment Modules== | ==Environment Modules== | ||
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{{#if: {{#var: exe}}|==Additional Information== | {{#if: {{#var: exe}}|==Additional Information== | ||
| − | + | Command-line components can be used for large-scale batch jobs. | |
| + | GUI components can be used only on [[GUI Programs|GUI server]] for short-term lightweight operations. | ||
| + | =License Activation= | ||
| + | Once you load the module please use the trackvis_add_license tool we provide to set up the TrackVis license for your account. | ||
|}} | |}} | ||
| − | <!-- | + | <!--PBS scripts--> |
| − | {{#if: {{#var: | + | {{#if: {{#var: pbs}}|==PBS Script Examples== |
| − | See the [[{{PAGENAME}} | + | See the [[{{PAGENAME}}_PBS]] page for {{#var: app}} PBS script examples. |
|}} | |}} | ||
<!--Policy--> | <!--Policy--> | ||
{{#if: {{#var: policy}}|==Usage Policy== | {{#if: {{#var: policy}}|==Usage Policy== | ||
| − | |||
WRITE USAGE POLICY HERE (Licensing, usage, access). | WRITE USAGE POLICY HERE (Licensing, usage, access). | ||
| − | |||
|}} | |}} | ||
<!--Performance--> | <!--Performance--> | ||
{{#if: {{#var: testing}}|==Performance== | {{#if: {{#var: testing}}|==Performance== | ||
| − | |||
WRITE_PERFORMANCE_TESTING_RESULTS_HERE | WRITE_PERFORMANCE_TESTING_RESULTS_HERE | ||
| − | |||
|}} | |}} | ||
<!--Faq--> | <!--Faq--> | ||
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{{#if: {{#var: citation}}|==Citation== | {{#if: {{#var: citation}}|==Citation== | ||
If you publish research that uses {{#var:app}} you have to cite it as follows: | If you publish research that uses {{#var:app}} you have to cite it as follows: | ||
| − | |||
WRITE_CITATION_HERE | WRITE_CITATION_HERE | ||
| − | |||
|}} | |}} | ||
<!--Installation--> | <!--Installation--> | ||
Latest revision as of 14:56, 18 October 2022
Description
TrackVis is a software tool that can visualize and analyze fiber track data from diffusion MR imaging (DTI/DSI/HARDI/Q-Ball) tractography. Features of TrackVis include:
- Cross-platform. Works on Windows, Mac OS X and Linux with native look and feel.
- A variety of track filters (track selecting methods) allowing users to explore and locate specific bundles with ease.
- Multiple rendering modes with customizable scalar-driven color codes.
- Real-time parameter adjustment and 3D render.
- Open format of the track data file allowing users to integrate customized scalar data into the track file and visualize and analyze it. Save and restore scenes in XML style scene file.
- Statistical scalar analysis of tracks and ROIs.
- Synchronized real-time multiple dataset analysis and display allowing time-point and/or subject comparison. *Synchronized analysis and display on same dataset can also be performed in real-time remotely over the network.
- Upfront in-line parameter adjustment in real-time. No tedious pop-up dialogs.
Environment Modules
Run module spider trackvis to find out what environment modules are available for this application.
System Variables
- HPC_TRACKVIS_DIR - installation directory
Additional Information
Command-line components can be used for large-scale batch jobs.
GUI components can be used only on GUI server for short-term lightweight operations.
License Activation
Once you load the module please use the trackvis_add_license tool we provide to set up the TrackVis license for your account.