Difference between revisions of "Spidey"
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Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
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| − | [[Category:Software]][[Category: | + | [[Category:Software]][[Category:Biology]][[Category:Genomics]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|spidey}} | |{{#vardefine:app|spidey}} | ||
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| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
Latest revision as of 20:44, 12 August 2022
Description
Spidey is an mRNA-to-genomic alignment program. Spidey has two main goals: find good alignments regardless of intron size; and avoid getting confused by nearby pseudogenes and paralogs. Spidey uses NCBI BLAST and Dot View (another local alignment tool) to find its alignments; since these are both local alignment tools, Spidey does not intrinsically favor shorter or longer introns and has no maximum intron size.
Environment Modules
Run module spider spidey to find out what environment modules are available for this application.
System Variables
- HPC_SPIDEY_DIR - installation directory