Difference between revisions of "SHEsisPlus"

Latest revision as of 15:04, 19 August 2022

Description

SHEsisPlus is a a software package for analysis of genetic association, Hardy-weinberg equilibrium, linkage disequilibrium and haplotype construction at multiallelic polymorphism loci, compatible for both diploid and polyploid species.

Environment Modules

Run module spider shesisplus to find out what environment modules are available for this application.

System Variables

HPC_SHESISPLUS_DIR - installation directory

Citation

If you publish research that uses shesisplus you have to cite it as follows:

[1] Neigenfind J1, Gyetvai G, Basekow R, Diehl S, Achenbach U, Gebhardt C, Selbig J, Kersten B.Haplotype inference from unphased SNP data in heterozygous polyploids based on SAT. BMC Genomics 2008 Jul 30;9:356. doi: 10.1186/1471-2164-9-356.

[2] Purcell S1, Neale B, Todd-Brown K, Thomas L, Ferreira MA, Bender D, Maller J, Sklar P, de Bakker PI, Daly MJ, Sham PC.PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet 2007 Sep;81(3):559-75. Epub 2007 Jul 25.

[3] Hedrick PW. Gametic disequilibrium measures: proceed with caution. Genetics 1987 Oct;117(2):331-41.

@@ Line 1: / Line 1: @@
-[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
+[[Category:Software]][[Category:Biology]][[Category:Genomics]]
 {|<!--CONFIGURATION: REQUIRED-->
 |{{#vardefine:app|shesisplus}}
@@ Line 21: / Line 21: @@
 <!--Modules-->
-==Required Modules==
+==Environment Modules==
+Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
-===Serial===
-* gcc/5.2.0
-* {{#var:app}}
-<!--
-===Parallel (OpenMP)===
-* intel
-* {{#var:app}}
-===Parallel (MPI)===
-* intel
-* openmpi
-* {{#var:app}}
--->
 ==System Variables==
 * HPC_{{uc:{{#var:app}}}}_DIR - installation directory