Difference between revisions of "SNAPE-pooled"

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[[Category:Software]][[Category:Biology]][[Category:SNP]]
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[[Category:Software]][[Category:Biology]][[Category:Variant Calling]]
 
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{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|snape-pooled}}
 
|{{#vardefine:app|snape-pooled}}
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<!--Modules-->
==Required Modules==
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==Environment Modules==
 
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
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=Validation=
 
* Validate 4/5/2018
 

Latest revision as of 12:56, 15 August 2022

Description

snape-pooled website  

SNAPE-pooled computes the probability distribution for the frequency of the minor allele in a certain population, at a certain position in the genome. If this probability is high enough, then you have a segregating position, a.k.a. SNP.


Environment Modules

Run module spider snape-pooled to find out what environment modules are available for this application.

System Variables

  • HPC_SNAPE-POOLED_DIR - installation directory