Difference between revisions of "LobSTR"

From UFRC
Jump to navigation Jump to search
m (Text replacement - "#uppercase" to "uc")
 
Line 21: Line 21:
  
 
<!--Modules-->
 
<!--Modules-->
==Required Modules==
+
==Environment Modules==
 
+
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
* gcc/5.2.0
 
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory

Latest revision as of 15:19, 10 June 2022

Description

lobstr website  

lobSTR is a tool for profiling Short Tandem Repeats (STRs) from high throughput sequencing data.

Environment Modules

Run module spider lobstr to find out what environment modules are available for this application.

System Variables

  • HPC_LOBSTR_DIR - installation directory
  • HPC_LOBSTR_BIN - executable directory
  • LOBSTR_INDEXES - indexes directory