Difference between revisions of "Amphora2"
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| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
Latest revision as of 17:35, 10 June 2022
Description
An Automated Phylogenomic Inference Pipeline for Bacterial and Archaeal Sequences.
AMPHORA2 is free software: you may redistribute it and/or modify its under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or any later version.
Environment Modules
Run module spider amphora2 to find out what environment modules are available for this application.
System Variables
- HPC_AMPHORA2_DIR - installation directory
- HPC_AMPHORA2_BIN - executable directory
- HPC_AMPHORA2_DOC - documentation directory
- HPC_AMPHORA2_EXE - test data directory
- HPC_AMPHORA2_TAX- taxonomy data directory
- HPC_AMPHORA2_TREE - tree data directory
Citation
If you publish research that uses amphora2 you have to cite it as follows: