Difference between revisions of "Crux"

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m (Text replacement - "#uppercase" to "uc")
 
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[[Category:Software]][[Category:Bioinformatics]][[Category:Spectroscopy]]
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[[Category:Software]][[Category:Biology]][[Category:Spectroscopy]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|crux}}
 
|{{#vardefine:app|crux}}
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<!--Modules-->
 
<!--Modules-->
==Required Modules==
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==Environment Modules==
<!--
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
* {{#var:app}}
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
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__NOTOC____NOEDITSECTION__
 
__NOTOC____NOEDITSECTION__
=Validation=
 
* Validated 4/5/2018
 

Latest revision as of 18:39, 12 August 2022

Description

crux website  

Crux is a software toolkit for tandem mass spectrometry analysis, with a focus on peptide identification.

Environment Modules

Run module spider crux to find out what environment modules are available for this application.

System Variables

  • HPC_CRUX_DIR - installation directory
  • HPC_CRUX_BIN - executable directory
  • HPC_CRUX_DOC - html documentation directory




Citation

If you publish research that uses crux you have to cite it as follows:

Christopher Y. Park, Aaron A. Klammer, Lukas Käll, Michael J. MacCoss and William Stafford Noble. "Rapid and accurate peptide identification from tandem mass spectra." Journal of Proteome Research. 7(7):3022--3027, 2008.