Difference between revisions of "PB-Assembly"
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Moskalenko (talk | contribs) (Created page with "Category:SoftwareCategory:Biology {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|pb-assembly}} |{{#vardefine:url|https://github.com/PacificBiosciences/pb-assembly}...") |
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| − | [[Category:Software]][[Category:Biology]] | + | [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|pb-assembly}} | |{{#vardefine:app|pb-assembly}} | ||
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 20:11, 24 August 2022
Description
pb-assembly is a collection of PacBio software including the following applications and their dependencies:
- FALCON assembly
- FALCON-Unzip to phase the genome and perform phased-polishing with Arrow
- FALCON-Phase to extend phasing between unzipped haplotig blocks (requires HiC data)
Environment Modules
Run module spider pb-assembly to find out what environment modules are available for this application.
System Variables
- HPC_PB-ASSEMBLY_DIR - installation directory