Difference between revisions of "DRep"
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(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|drep}} |{{#vardefine:url|https://github.com/MrOlm/drep}} <!--CONFIGURATION:...") |
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 21:21, 6 December 2019
Description
dRep is a python program for rapidly comparing large numbers of genomes. dRep can also "de-replicate" a genome set by identifying groups of highly similar genomes and choosing the best representative genome for each genome set.
Environment Modules
Run module spider drep to find out what environment modules are available for this application.
System Variables
- HPC_DREP_DIR - installation directory
- HPC_DREP_BIN - executable directory