Difference between revisions of "Booster"
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(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|booster}} |{{#vardefine:url|https://github.com/evolbioinfo/booster}} <!--CON...") |
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|{{#vardefine:testing|}} <!--PROFILING--> | |{{#vardefine:testing|}} <!--PROFILING--> | ||
|{{#vardefine:faq|}} <!--FAQ--> | |{{#vardefine:faq|}} <!--FAQ--> | ||
| − | |{{#vardefine:citation|}} <!--CITATION--> | + | |{{#vardefine:citation|1}} <!--CITATION--> |
|{{#vardefine:installation|}} <!--INSTALLATION--> | |{{#vardefine:installation|}} <!--INSTALLATION--> | ||
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
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If you publish research that uses {{#var:app}} you have to cite it as follows: | If you publish research that uses {{#var:app}} you have to cite it as follows: | ||
| − | [https://www.nature.com/articles/s41586-018-0043-0 Renewing Felsenstein's Phylogenetic Bootstrap in the Era of Big Data | + | [https://www.nature.com/articles/s41586-018-0043-0 Renewing Felsenstein's Phylogenetic Bootstrap in the Era of Big Data F. Lemoine, J.-B. Domelevo-Entfellner, E. Wilkinson, D. Correia, M. Davila Felipe, T. De Oliveira, O. Gascuel. Nature 556, 452-456 (2018)] |
| − | F. Lemoine, J.-B. Domelevo-Entfellner, E. Wilkinson, D. Correia, M. Davila Felipe, T. De Oliveira, O. Gascuel. | ||
| − | Nature 556, 452-456 (2018)] | ||
|}} | |}} | ||
Latest revision as of 21:11, 6 December 2019
Description
BOOSTER is a new way of computing bootstrap supports in large phylogenies.
Environment Modules
Run module spider booster to find out what environment modules are available for this application.
System Variables
- HPC_BOOSTER_DIR - installation directory
- HPC_BOOSTER_BIN - executable directory
Citation
If you publish research that uses booster you have to cite it as follows: